Statistics
Analyze data using python and R-studio.
Wonyoung Cho.
R-Studio installation
Set CRAN mirror to seoul
$ vi ~/.Rprofile
local({
r <- getOption("repos")
r["CRAN"] <- "https://cran.seoul.go.kr/"
options(repos = r)
})
https://cran.r-project.org/mirrors.html
CentOS
$ wget https://cran.r-project.org/src/base/R-4/R-4.0.3.tar.gz
$ sudo tar -zxvf R-4.0.3.tar.gz -C /usr/bin/R
$ cd /usr/bin/R/R-3.6.0
$ sudo ./configure --enable-R-shlib --with-pcre1 --with-cairo --prefix=/local_path
$ sudo make
> If below message is shown, then install **libcurl-devel**.
libcurl >= 7.22.0 library and headers are required with support for https
$ sudo yum install libcurl-devel
$ cd /usr/bin/R/R-3.6.0/bin
$ ./R
or
$ sudo yum install epel-release
$ sudo yum update
$ sudo yum install -y R
Ububtu
Add repository in /etc/apt/sources.list matching with your OS.
deb https://cloud.r-project.org/bin/linux/ubuntu disco-cran35/
deb https://cloud.r-project.org/bin/linux/ubuntu cosmic-cran35/
deb https://cloud.r-project.org/bin/linux/ubuntu bionic-cran35/
deb https://cloud.r-project.org/bin/linux/ubuntu xenial-cran35/
deb https://cloud.r-project.org/bin/linux/ubuntu trusty-cran35/
$ sudo apt-get update
If some error about publick key is shown during the update, you need to fetch the public key in your system.
ex) The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 9867KJ2741IO09
$ sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 9867KJ2741IO09
After then, update and install R.
$ sudo apt-get update
$ sudo apt-get install r-base r-base-dev
Installation and compilation of R or some of its packages may require Ubuntu packages from the “backports” repositories. Therefore, it is suggested to activate the backports repositories with an entry like
deb https://<my.favorite.ubuntu.mirror>/ bionic-backports main restricted universe
in your /etc/apt/sources.list file.
https://cran.r-project.org/bin/linux/ubuntu/README.html
R-Studio server installation
CentOS
$ wget https://download2.rstudio.org/server/centos6/x86_64/rstudio-server-rhel-1.2.1335-x86_64.rpm
$ sudo yum install rstudio-server-rhel-1.2.1335-x86_64.rpm
Ubuntu
$ sudo apt-get install -y apt-transport-https (if needed)
$ sudo apt install gdebi-core
$ cd Download
$ wget https://download2.rstudio.org/server/bionic/amd64/rstudio-server-1.2.5001-amd64.deb
$ sudo gdebi rstudio-server-1.2.5001-amd64.deb
https://rstudio.com/products/rstudio/download-server/debian-ubuntu/
Configure
$ sudo emacs /etc/rstudio/rserver.conf
www-port=8787
www-address=192.168.0.1 # it is a pc ip address which the R-server has been installed.
rsession-which-r=/usr/bin/R/R-3.6.0/bin/R
$ sudo emacs /etc/rstudio/rsession.conf
www-port=8787
$ rstudio-server stop
$ rstudio-server verify-installation
$ rstudio-server start
- Open R-studio.
Open web browser - Connect to http://192.168.0.1:8787 - Log in with pc ID and PASSWORD.
- If the connection is refused, allow the port.
$ sudo firewall-cmd --permanent --zone=public --add-port=8787/tcp
$ sudo firewall-cmd --reload
$ sudo ufw allow 8787
- Install packages
$ sudo yum install libgit2-devel libxml2-devel lapack-devel
$ wget https://github.com/Kitware/CMake/releases/download/v3.19.1/cmake-3.19.1.tar.gz
$ tar zxvf cmake-3.*
$ cd cmake-3.*
$ ./bootstrap
$ make -j$(nproc)
$ make install
# Recommend to install as root
> install.packages("devtools")
> install.packages(c("devtools","curl"))
Reference